Afonin D.A., Gerasimov E.S.,
Škodová-Sveráková I.,
Záhonová K.,
Gahura O., Albanaz A.T.S.,
Myšková E., Bykova A., Paris Z.,
Lukeš J., Opperdoes F.R., Horváth A., Zimmer S., Yurchenko V. (2024) Blastocrithidia nonstop mitochondrial genome and its expression are remarkably insulated from nuclear codon reassignment Nucleic Acids Research
50: 3870–3885.
DOI: 10.1093/nar/gkae168
Documents to download:
Afonin_2024_NAR (pdf)
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Kachale A., Pavliková Z.,
Nenarokova A., Roithová A.,
Durante I., Miletínová P.,
Záhonová K.,
Nenarokov S.,
Votýpka J.,
Horáková E., Ross R.L., Yurchenko V., Beznosková P., Paris Z., Valášek L.S.,
Lukeš J. (2023) Short tRNA anticodon stem and mutant eRF1 allow stop codon reassignment Nature
613: 751–758.
DOI: 10.1038/s41586-022-05584-2
Documents to download:
Kachale_2023_Nature (pdf)
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Valášek L.S.,
Lukeš J., Paris Z. (2023) Stops making sense – For the people? Clinical and Translational Medicine
13: e1270.
DOI: 10.1002/ctm2.1270
Documents to download:
Valasek_2023_ClinTransMed (pdf)
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Hegedüsová E., Maršalová V.,
Kulkarni S., Paris Z. (2022) Trafficking and/or division: Distinct roles of nucleoporins based on their location within the nuclear pore complex RNA Biology
19: 650–661.
DOI: 10.1080/15476286.2022.2067711
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Dixit S., Kessler A.C., Henderson J., Pan X., Zhao R., D'Almeida G.S.,
Kulkarni S., Rubio M.,
Hegedüsová E., Ross R.L., Limbach P., Green B.D., Paris Z., Alfonzo J. (2021) Dynamic queuosine changes in tRNA couple nutrient levels to codon choice in Trypanosoma brucei Nucleic Acids Research
49: 12986–12999.
DOI: 10.1093/nar/gkab1204
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Kulkarni S., Rubio M.,
Hegedüsová E., Ross R.L., Limbach P., Alfonzo J., Paris Z. (2021) Preferential import of queuosine-modified tRNAs into Trypanosoma brucei mitochondrion is critical for organellar protein synthesis Nucleic Acids Research
49: 8247–8260.
DOI: 10.1093/nar/gkab567
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Mishra A., Kaur J.N., McSkimming D.I.,
Hegedüsová E., Dubey A.P., Ciganda M., Paris Z., Read L. (2021) Selective nuclear export of mRNAs is promoted by DRBD18 in Trypanosoma brucei. Molecular Microbiology
116: 827–840.
DOI: 10.1111/mmi.14773
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Paris Z. (2021) Nuclear tRNA export in trypanosomes: a journey full of twists and turns guided by tRNA modifications Parasitology
148: 1219–1222.
DOI: 10.1017/S0031182021000482
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Paris Z.,
Svobodová M.,
Kachale A.,
Horáková E.,
Nenarokova A.,
Lukeš J. (2021) A mitochondrial cytidine deaminase is responsible for C to U editing of tRNATrp to decode the UGA codon in Trypanosoma brucei RNA Biology
14: 278–286.
DOI: 10.1080/15476286.2021.1940445
Documents to download:
Paris_2021_RNA (pdf)
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Hegedüsová E.,
Kulkarni S., Burgman B., Alfonzo J., Paris Z. (2019) The general mRNA exporters Mex67 and Mtr2 play distinct roles in nuclear export of tRNAs in Trypanosoma brucei Nucleic Acids Research
47: 8620–8631.
DOI: 31392978
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Kessler A.C.,
Kulkarni S., Paulines M.J., Rubio M., Limbach P., Paris Z., Alfonzo J. (2018) Retrograde nuclear transport from the cytoplasm is required for tRNATyr maturation in T. brucei RNA Biology
15: 528–536.
DOI: 10.1080/15476286.2017.1377878
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Paris Z., Alfonzo J. (2018) How the intracellular partitioning of tRNA and tRNA modification enzymes affects mitochondrial function. IUBMB Life
70: 1207–1213.
DOI: 10.1002/iub.1957
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Rubio M., Gaston K., McKenney K., Fleming I., Paris Z., Limbach P., Alfonzo J. (2017) Editing and methylation at a single site by functionally interdependent activities Nature
542: 494-497.
DOI: 10.1038/nature21396
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Fleming I., Paris Z., Gaston K., Gaston K., Balakrishnan R., Fredrick K., Rubio M., Alfonzo J. (2016) A tRNA methyltransferase paralog is important for ribosome stability and cell division in Trypanosoma brucei Scientific Reports
6: 21438.
DOI: 10.1038/srep21438
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Lopes R., Silveira G., Eitler R., Vidal R., Kessler A., Hinger S., Paris Z., Alfonzo J., Polycarpo C. (2016) The essential function of the Trypanosoma brucei Trl1 homolog in procyclic cells is maturation of the intron-containing tRNATyr. RNA
22: 1190-1199.
DOI: 10.1261/rna.056242.116
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Zíková A., Hampl V., Paris Z.,
Týč J.,
Lukeš J. (2016) Aerobic mitochondria of parasitic protists: diverse genomes and complex functions. Molecular and Biochemical Parasitology
209: 46-57.
DOI: 10.1016/j.molbiopara.2016.02.007
Documents to download:
Zikova et al. 2016 MBP (pdf)
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Horáková E.,
Changmai P., Paris Z., Salmon D.,
Lukeš J. (2015) Simultaneous depletion of Atm and Mdl rebalances cytosolic Fe-S cluster assembly but not heme import into the mitochondrion of Trypanosoma brucei FEBS Journal
282: 4157-4175.
DOI: 10.1111/febs.13411
Documents to download:
Horkova et al. 2015 FEBS Journal (pdf)
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Sample P.,
Kořený L., Paris Z., Gaston K., Rubio M., Fleming I., Hinger S.,
Horáková E., Limbach P.,
Lukeš J., Alfonzo J. (2015) A common tRNA modification at an unusual location: the discovery of wyosine biosynthesis in mitochondria Nucleic Acid Research
43: 4262-4273.
DOI: 10.1093/nar/gkv286
Documents to download:
Sample_et_al_NAR_2015 (pdf)
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Verner Z.,
Basu S., Benz C.,
Dixit S.,
Dobáková E.,
Faktorová D.,
Hashimi H.,
Horáková E.,
Huang Z., Paris Z., Pena P., Ridlon L.,
Týč J.,
Wildridge D.,
Zíková A.,
Lukeš J. (2015) The malleable mitochondrion of Trypanosoma brucei Internation Review of Cell and Molecular Biology
315: 73-151.
DOI: 10.1016/bs.ircmb.2014.11.001
Documents to download:
Verner-IRCMB-2015 (pdf)
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Paris Z.,
Horáková E., Rubio M., Sample P., Fleming I., Armocida S.,
Lukeš J., Alfonzo J. (2013) The T. brucei TRM5 methyltransferase plays an essential role in mitochondrial protein synthesis and function. RNA
19: 649-658.
Documents to download:
2013_Paris_RNA_649 (pdf)
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