Ing. Tomáš Kocábek, Ph.D.
Research Scientist
IPMB Secretariat
Institute of Plant Molecular Biology
+420 387 775 543; +420 387 775 508
kocabek@umbr.cas.cz
306,307
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Total found: 35 records
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Awasthi P., Mishra A.K., Kocábek T., Sukumari Nath V., Mishra S., Hazzouri K.M., Sudalaimuthuasari N., Stajner N., Jakše J., Krofta K., Hájek T., Amiri K.M.A. (2023) CRISPR/Cas9-mediated mutagenesis of the mediator complex subunits MED5a and MED5b genes impaired secondary metabolite accumulation in hop (Humulus lupulus) Plant Physiology and Biochemistry
201: 107851.
DOI: 10.1016/j.plaphy.2023.107851 |
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Mishra A.K., Kocábek T., Sukumari Nath V.,
Khan A.,
Matoušek J., Hazzouri K.M., Sudalaimuthuasar N., Krofta K., Ludwig-Müller J., Amiri K.M.A. (2023) The multifaceted roles of R2R3 transcription factor HlMYB7 in the regulation of flavonoid and bitter acids biosynthesis, development and biotic stress tolerance in hop (Humulus lupulus L.) Plant Physiology and Biochemistry
197: 107636.
DOI: 10.1016/j.plaphy.2023.03.013 |
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Awasthi P., Kocábek T.,
Mishra A.,
Sukumari Nath V.,
Shrestha A.,
Matoušek J. (2021) Establishment of CRISPR/Cas9 mediated targeted mutagenesis in hop (Humulus lupulus) Plant Physiology and Biochemistry
161: 1-7.
DOI: 10.1016/j.plaphy.2021.01.006 |
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Sukumari Nath V.,
Mishra A.,
Awasthi P.,
Shrestha A.,
Matoušek J., Jakse J., Kocábek T.,
Khan A. (2021) Identification and characterization of long non-coding RNA and their response against Citrus bark cracking viroid infection in Humulus lupulus Genomics
113 (4): 2350-2364.
DOI: 10.1016/j.ygeno.2021.05.029 |
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Matoušek J., Steinbachová L., Záveská Drábková L., Kocábek T., Potěšil D.,
Mishra A., Honys D., Steger G. (2020) Elimination of viroids from tobacco pollen involves a decrease in propagation rate and an increase of the degradation processes International Journal of Molecular Sciences
21: 3029.
DOI: 10.3390/ijms21083029 |
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Mishra A., Kocábek T.,
Sukumari Nath V.,
Awasthi P.,
Shrestha A.,
Killi U., Jakse J., Patzak J., Krofta K.,
Matoušek J. (2020) Dissection of Dynamic Transcriptome Landscape of Leaf, Bract, and Lupulin Gland in Hop (Humulus lupulus L.) International Journal of Molecular Sciences
21 (1): 233.
DOI: 10.3390/ijms21010233 |
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Shrestha A.,
Mishra A.,
Matoušek J., Steinbachová L., Potměšil D.,
Sukumari Nath V.,
Awasthi P., Kocábek T., Jakse J., Záveská Drábková L., Zdráhal Z., Honys D., Steger G. (2020) Integrated Proteo-Transcriptomic Analyses Reveal Insights into Regulation of Pollen Development Stages and Dynamics of Cellular Response to Apple Fruit Crinkle Viroid (AFCVd)-Infection in Nicotiana tabacum International Journal of Molecular Sciences
21: 8700.
DOI: 10.3390/ijms21228700 |
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Sukumari Nath V.,
Shrestha A.,
Awasthi P.,
Mishra A., Kocábek T.,
Matoušek J., Sečnik A., Jakše J., Radišek S., Hallan V. (2020) Mapping the Gene Expression Spectrum of Mediator Subunits in Response to Viroid Infection in Plants International Journal of Molecular Sciences
21: 2498.
DOI: 10.3390/ijms21072498 |
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Mishra A.,
Siglová K., Kocábek T.,
Duraisamy G., Patzak J., Ono E.,
Matoušek J. (2019) Analysis of promoters of genes putatively involved in regulation of lupulin and dissecting the role of miRNAs in the regulatory network Acta Horticulture
1236: 153-157.
DOI: 10.17660/ActaHortic.2019.1236.20 |
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Duraisamy G.,
Mishra A., Kocábek T.,
Matoušek J. (2018) Activation of polyketide synthase gene promoter in Cannabis sativa by heterologous transcription factors derived from Humulus lupulus Biologia Plantarum
62: 250-260.
DOI: 10.1007/s10535-017-0766-z |
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Kocábek T.,
Mishra A.,
Matoušek J., Patzak J.,
Lomnická A.,
Khare M., Krofta K. (2018) The R2R3 transcription factor HlMYB8 and its role in flavonoid biosynthesis in hop (Humulus lupulus L.) Plant science
269: 32-46.
DOI: 10.1016/j.plantsci.2018.01.004 |
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Mishra A.,
Duraisamy G.,
Khare M., Kocábek T., Jakse J.,
Bříza J., Patzak J., Sano T.,
Matoušek J. (2018) Genome-wide transcriptome profiling of transgenic hop (Humulus lupulus L.) constitutively overexpressing HlWRKY1 and HlWDR1 transcription factors BMC Genomics
19: 739.
DOI: 10.1186/s12864-018-5125-8 |
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Mishra A.,
Kumar A.,
Mishra D.,
Sukumari Nath V., Jakše J., Kocábek T.,
Killi U.,
Morina F.,
Matoušek J. (2018) Genome-Wide Transcriptomic Analysis Reveals Insights into the Response to Citrus bark cracking viroid (CBCVd) in Hop (Humulus lupulus L.) Viruses
10: 570.
DOI: DOI: 10.3390/v10100570 |
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Duraisamy G.,
Mishra A., Kocábek T.,
Matoušek J. (2016) Identification and characterization of promoters and cis-regulatory elements of genes involved in secondary metabolites production in hop (Humulus lupulus. L) Computational Biology and Chemistry
64: 346–352.
DOI: 10.1016/j.compbiolchem.2016.07.010 |
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Matoušek J., Kocábek T., Patzak J.,
Bříza J.,
Siglová K.,
Mishra A.,
Duraisamy G.,
Týcová A., Ono E., Krofta K. (2016) The "putative" role of transcription factors from HlWRKY family in the regulation of the final steps of prenylflavonid and bitter acids biosynthesis in hop (Humulus lupulus L.) Plant molecular biology
92: 263-277.
DOI: 10.1007/s11103-016-0510-7 |
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Matoušek J., Piernikarczyk R.,
Týcová A.,
Duraisamy G., Kocábek T., Steger G. (2015) Expression of SANT/HTH Myb mRNA, a plant morphogenesis-regulating transcription factor, changes due to viroid infection Journal of Plant Physiology
183: 85-94.
DOI: 10.1016/j.jplph.2015.06.001 |
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Matoušek J., Kocábek T., Patzak J. (2013) Molecular background and networking putatively involved in regulation of lupulin gland metabolome - Results and prospects Acta Horticulturae
1010: 39-46.
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Matoušek J., Kocábek T., Patzak J.,
Füssy Z.,
Procházková J., Heyerick A. (2012) Combinatorial analysis of lupulin gland transcription factors from R2R3Myb, bHLH and WDR families indicates a complex regulation of chs_H1 genes essential for prenylflavonoid biosynthesis in hop (Humulus lupulus L.) BMC Plant Biology
12: 27.
DOI: 10.1186/1471-2229-12-27 |
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Matoušek J., Patzak J., Kocábek T.,
Füssy Z.,
Stehlík J.,
Orctová L.,
Duraisamy G. (2011) Functional analyses of lupulin gland-specific regulatory factors from WD40, bHLH and Myb families of hop (Humulus lupulus L.) show formation of crucial complexes activating chs_H1. Brewing Science
64: 151-155.
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Matoušek J., Kocábek T., Patzak J.,
Stehlík J.,
Füssy Z., Krofta K., Heyerick A., Roldán-Ruiz I., Maloukh L., De Keukeleire D. (2010) Cloning and Molecular Analysis of HlbZip1 and HlbZip2 Transcription Factors Putatively Involved in the Regulation of the Lupulin Metabolome in Hop (Humulus lupulus L.) Journal of Agricultural and Food Chemistry
58: 902-912.
DOI: 10.1021/jf9043106 |
